Research blog

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Confinement-driven state transition and bistability in schooling fish

B. Lafoux, P. Bernard, B. Thiria, R. Godoy-Diana
Physical Review E, 110(3), 034613 (2024).
doi: 10.1103/PhysRevE.110.034613
arXiv preprint: https://arxiv.org/abs/2401.01850

In this work we have quantified how fish swimming in groups change their behavior based on how crowded they are. We found that fish switch between two main swimming patterns: moving in the same direction or circling like a whirlpool. The amount of space available influences how long the fish stick to each pattern and how often they switch. This research not only helps us understand how fish and other animals behave in groups, but also provides valuable real-world data that can help tuning computer models of group behavior. The findings highlight the importance of considering space limitations when studying how animals move together, which could lead to better understanding of complex group behaviors in nature.

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Form and function of anguilliform swimming: a review

V. Stin, R. Godoy-Diana, X. Bonnet, & A. Herrel
Biological Reviews (2024)
doi: 10.1111/brv.13116

Anguilliform swimmers are long and narrow animals that propel themselves by undulating their bodies. Observations in nature and recent investigations suggest that anguilliform swimming is highly efficient. However, understanding the underlying reasons for the efficiency of this type of locomotion requires interdisciplinary studies spanning from biology to hydrodynamics. Regrettably, these different fields are rarely discussed together, which hinders our ability to understand the repeated evolution of this swimming mode in vertebrates. This review compiles the current knowledge of the anatomical features that drive anguilliform swimming, compares the resulting kinematics across a wide range of anguilliform swimmers, and describes the resulting hydrodynamic interactions using data from both in vivo experiments and computational studies.

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Drag-induced dissipation in wave-structure interaction

In the interaction of water waves with marine structures, the interplay between wave diffraction and drag-induced dissipation is seldom, if ever, considered. In particular, linear hydrodynamic models, and extensions thereof through the addition of a quadratic force term, do not represent the change in amplitude of the waves diffracted and radiated to the far field, which should result from local energy dissipation in the vicinity of the structure. In this work, a series of wave flume experiments is carried out, whereby waves of increasing amplitude impinge upon a vertical barrier, extending partway through the flume width. As the wave amplitude increases, the effect of drag – which is known to increase quadratically with the flow velocity – is enhanced, thus allowing the examination of the far-field effect of drag-induced dissipation, in terms of wave reflection and transmission. A potential flow model is proposed, with a simple quadratic pressure drop condition through a virtual porous surface, located on the sides of the barrier (where dissipation occurs). Experimental results confirm that drag-induced dissipation has a marked effect on the diffracted flow, i.e. on wave reflection and transmission, which is appropriately captured in the proposed model. Conversely, when diffraction becomes dominant as the barrier width becomes comparable to the incoming wavelength, the diffracted flow must be accounted for in predicting drag-induced forces and dissipation.

Modelling the far-field effect of drag-induced dissipation in wave-structure interaction: A numerical and experimental study
A. Mérigaud, B. Thiria, R. Godoy-Diana, G. Perret
Journal of Fluid Mechanics, 987, A24 (2024).
doi: 10.1017/jfm.2024.298

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Lift-up and streak waviness drive the self-sustained process in wall-bounded transition to turbulence

Flow field measurements from a Couette-Poiseuille experiment are used to examine quantitatively certain steps of the self-sustained process (SSP) of wall-bounded transition to turbulence. Although the different parts of the SSP have been discussed at large in the literature, direct measurements from experiment are scarce and the present results show, using a local analysis of the turbulent patterns, that (1) the amplitude of streamwise rolls is related to streak waviness, bringing a quantitative picture to one of the main physical mechanisms of Waleffe’s model of SSP, and (2), at low waviness, direct measurements of the correlation between the streak and roll amplitudes, respectively probed by the streamwise and wall-normal velocity perturbations, quantify the lift-up effect. This analysis method of the SSP does not rely on the specificity of Couette-Poiseuille flows and can be used to investigate this mechanism in other flows.

T. Liu, B. Semin, R. Godoy-Diana, J. E. Wesfreid
Physical Review Fluids, 9, 033901 (2024).
doi: 10.1103/PhysRevFluids.9.033901

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Thrust force is tuned by the rigidity distribution in insect-inspired flapping wings

R. Antier, B. Thiria, & R. Godoy-Diana
Journal of Fluids and Structures, 124, 104043 (2024).
doi: 10.1016/j.jfluidstructs.2023.104043

We study the aerodynamics of a flapping flexible wing with a two-vein pattern that mimics the elastic response of insect wings in a simplified manner. The experiments reveal a non-monotonic variation of the thrust force produced by the wings when the angle between the two veins is varied. An optimal configuration is consistently reached when the two veins are spaced at an angle of about 20 degrees. This value is in the range of what has been measured in the literature for several insect species. The deformation of the wings is monitored during the experiment using video recordings, which allows to pinpoint the physical mechanism behind the non-monotonic behaviour of the force curve and the optimal distribution of the vein network in terms of propulsive force.

2-wing flapping system mounted on a force sensor
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Far-field hydrodynamic interaction in a group of swimmers

Three-dimensional schools of hydrodynamically axisymmetric swimmers self-propelling at a constant velocity are studied. We introduce a low-order model for the induced velocity based on the far-field approximation. We inquire if, by holding suitable relative positions in the three-dimensional space, the swimmers can reduce the overall energy consumption of the school in comparison with the same number of isolated individuals at the same velocity. We find a considerable (several per cent) energy saving achievable by chain formations. The benefit increases asymptotically with the number of individuals, towards a finite limit that is a function of the minimum allowed spacing between each pair of neighbours.

G. Li, L. Duan, J. Sesterhenn, R. Godoy-Diana, B. Thiria, & D. Kolomenskiy
Journal of Fluid Mechanics, 974, A34 (2023).
doi: 10.1017/jfm.2023.802

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Workshop at Les Houches

The study of the mechanisms underlying animal swimming and flying has long motivated research efforts in the physical and biological sciences. Beyond the simple goal of understanding the fundamental question of animal locomotion, these problems have also inspired developments in engineering. It has certainly become commonplace to mention Leonardo da Vinci’s sketches of flying machines in most lectures and courses dealing with bio-inspired mechanics. The last quarter century has seen a huge increase in work on these topics at the interface of physics and biology, driven in part by the democratization of experimental fluid mechanics tools in biology labs (notably particle image velocimetry and high-speed video).

The objective of this workshop was to provide a collective picture of the state of the art and to indicate the avenues of research that we envision for the future. We focused on the macroscopic side of the broad topic of biolocomotion in fluids. We addressed animal locomotion problems such as fish swimming or flapping flight, where fluid-structure interactions between a deformable body and its environment are placed in the context of vortex-dominated flows. In addition to the problem of pure locomotion, questions of interactions between individuals and collective behavior were widely considered. Beyond the (bio)mechanics of the bodies involved, their actuation and passive elastic responses, and the fluid forces of the environment, we also devoted part of the discussion to sensory feedback systems, which are an intrinsic part of these unsteady problems.

Check out the program and abstracts here: https://biolocomotion.sciencesconf.org/

Looking forward to other meetings with this great crowd!

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Volumetric velocimetry of the wake of a swimming snake

We describe a method for measuring the 3D vortical structures produced by an anguilliform swimmer using volumetric velocimetry. The wake of freely swimming dice snakes (Natrix tessellata) was quantified, revealing the creation of multiple vortices along the body of the snake due to its undulation. The 3D structure of the vortices generally consisted of paired vortex tubes, some of which were linked together to form a hairpin structure. The observations match predictions from computational fluid dynamic studies of other anguilliform swimmers. Quantitative measurements allowed us to study vortex circulation and size, and global kinetic energy of the flow, which varied with swimming speed, vortex topology and individual characteristics. Our findings provide a baseline for comparing wake structures of snakes with different morphologies and ecologies and investigating the energetic efficiency of anguilliform swimming.


V. Stin, R. Godoy-Diana, X. Bonnet, & A. Herrel. Measuring the 3D wake of swimming snakes (Natrix tessellata) using volumetric velocimetry.
Journal of Experimental Biology, 226, jeb245929 (2023)
doi: 10.1242/jeb.245929

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Illuminance-tuned collective motion in fish

B. Lafoux, J. Moscatelli, R. Godoy-Diana & B. Thiria
Communications Biology 6, Article number: 585 (2023)
doi: 10.1038/s42003-023-04861-8

We experimentally investigate the role of illumination on the collective dynamics of a large school (ca. 50 individuals) of Hemigrammus rhodostomus.

Experimental setup: shallow swimming arena with illuminance control and infrared video recording

The structure of the group, defined using two order parameters (milling annd polarization), is quantified while progressively altering the visual range of the fish through controlled cycles of ambient light intensity. We show that, at low light levels, the individuals within the group are unable to form a cohesive group…

while at higher illuminance the degree of alignment of the school correlates with the light intensity. When increasing the illuminance, the school structure is successively characterized by a polarized state…

followed by a highly regular and stable rotational configuration (milling).

Our study shows that vision is necessary to achieve cohesive collective motion for free swimming fish schools, while the short-range lateral line sensing is insufficient in this situation. The present experiment therefore provides new insights into the interaction mechanisms that govern the emergence and intensity of collective motion in biological systems. Watch a full experiment here:

Full paper here:
Lafoux, B., Moscatelli, J., Godoy-Diana, R., Thiria, B. Illuminance-tuned collective motion in fish. Commun Biol 6, 585 (2023).
https://doi.org/10.1038/s42003-023-04861-8

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Geometrical framework for hydrodynamics and control of wave energy converters

A. Mérigaud, B. Thiria, & R. Godoy-Diana
PRX Energy 2, 023003 (2023)
doi: 10.1103/PRXEnergy.2.023003

Approaches for converting the energy of sea-surface waves into useful power remain on the fringe of renewable energy solutions despite years of research. Among the hundreds of proposed wave-energy converters, no single wave-energy device provides sufficient power to be an attractive practical solution. Therefore, considering an integrated farm of many devices is an intrinsic part of the problem. Models need to consider the dynamics of many devices simultaneously, and the devices’ interaction with each other and the environment introduces additional complexity. In this work, we propose a conceptually simple analysis framework that uses geometry in the complex plane to understand the basic relations underlying wave-energy conversion in a model farm. Under this framework, a single complex variable encapsulates wave reflection, transmission, and absorption by a row of wave-energy converters and provides guidance for achieving maximal power output under impedance-matching conditions.

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Special issue: Bioinspired fluid-structure interaction

https://iopscience.iop.org/journal/1748-3190/page/Bioinspired-Fluid-Structure-Interaction

Fluid-structure interaction (FSI) studies the interaction between fluid and solid objects. It helps understand how fluid motion affects solid objects and vice versa. FSI research is important in engineering applications such as aerodynamics, hydrodynamics, and structural analysis. It has been used to design efficient systems such as ships, aircraft, and buildings. FSI in biological systems has gained interest in recent years for understanding how organisms interact with their fluidic environment. Our special issue features papers on various biological and bio-inspired FSI problems.

S. Jung & R. Godoy-Diana
Bioinspiration & biomimetics 18, 030401 (2023)
Editorial article: 10.1088/1748-3190/acc778

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Intermittent vs. continuous swimming: An optimization tale

G. Li, D. Kolomenskiy, H. Liu, R. Godoy-Diana & B. Thiria
Physical Review Fluids 8, 013101 (2023)
doi: 10.1103/PhysRevFluids.8.013101
see also in Physics Magazine: Why Fish Swim Intermittently

Intermittent swimming, also termed “burst-and-coast swimming,” has been reported as a strategy for fish to enhance their energetical efficiency. Intermittent swimming involves additional control parameters, which complexifies its understanding by means of quantitative and parametrical analysis, in comparison with continuous swimming. In this study, we used a hybrid computational fluid dynamic (CFD) model to assess the swimming performance in intermittent swimming parametrically and quantitatively. A Navier-Stokes solver is applied to construct a database in the multidimensional space of the control parameters to connect the undulation kinematics to swimming performance. Based on the database, an indirect numerical approach named “gait assembly” is used to generate arbitrary burst-and-coast gaits to explore the parameter space. Our simulations directly measured the hydrodynamics and energetics under the unsteady added-mass effect during burst-and-coast swimming. The results suggest that the instantaneous power of burst is basically determined by undulatory kinematics. The results show that the energetical performance of burst-and-coast swimming can be better than that of continuous swimming, but also that an unoptimized burst-and-coast gait may become very energetically expensive. These results shed light on the mechanisms at play in intermittent swimming, enabling us to better understand fish behavior and to propose design guidelines for fishlike robots.

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Divergence of climbing escape flight performance in Morpho butterflies living in different microhabitats

C. Le Roy, N. J. Silva, R. Godoy-Diana, V. Debat, V. Llaurens, and F. T. Muijres
Journal of Experimental Biology 225 (15), jeb243867 (2022)
doi: 10.1242/jeb.243867

Morpho butterflies are iconic insects of the Amazonian rainforest. Some Morpho species live in the dense vegetation of the understory (e.g. Morpho amathonte, cover photo) while other species inhabit the open canopy. We investigated how the divergent microhabitat specialization influences the evolution of flight performance. Quantification of climbing flight kinematics among closely related butterfly species living in different strata revealed markedly higher climbing ability in canopy species, probably resulting from divergent flight behaviour and morphology. Photo credit: Vincent Debat.

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Wake and aeroelasticity of a flexible pitching foil

The wake of a flapping foil is the basic model representing the propulsive mechanism of swimming and flying animals that use wings, fins, and body oscillations to drive their locomotion. The reverse Bénard-von Kármán vortex street is one of the landmark features of such wakes, since it is associated to the onset of thrust generation. The vortex shedding frequency is clocked by the flapping motion but, in a realistic model the force production dynamics is intimately linked to the elastic response of the flapping structure and the resonance between the different frequencies involved has been invoked in the literature to explain efficient flapping regimes. Here we show, using a wind tunnel experiment and hydrodynamic stability analysis, that thrust peaks occur when the wake resonant frequency is tuned with the foil elastic dynamics.

J. D’Adamo, M. Collaud, R. Sosa & R. Godoy-Diana
Bioinspiration & Biomimetics 17, 045002 (2022)
doi: 10.1088/1748-3190/ac6d96
[pdf file]

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How lateral-line sensing can enable swimming fish to judge their relative position and kinematic synchronization with a neighbor

Flow field computed around a pair of swimming fish. The pressure and shear-stress signals along the sides of the protagonist fish are monitored while changing the relative position and tail-beat phase lag of the companion fish.

For fish, swimming in group may be favorable to individuals. Several works reported that in a fish school, individuals sense and adjust their relative position to prevent collisions and maintain the group formation. Also, from a hydrodynamic perspective, relative-position and kinematic synchronisation between adjacent fish may considerably influence their swimming performance. Fish may sense the relative-position and tail-beat phase difference with their neighbors using both vision and the lateral-line system, however, when swimming in dark or turbid environments, visual information may become unavailable. To understand how lateral-line sensing can enable fish to judge the relative-position and phase-difference with their neighbors, in this study, based on a verified three-dimensional computational fluid dynamics approach, we simulated two fish swimming adjacently with various configurations. The lateral-line signal was obtained by sampling the surface hydrodynamic stress. The sensed signal was processed by Fast Fourier Transform (FFT), which is robust to turbulence and environmental flow. By examining the lateral-line pressure and shear-stress signals in the frequency domain, various states of the neighboring fish were parametrically identified. Our results reveal that the FFT-processed lateral-line signals in one fish may potentially reflect the relative-position, phase-differences, and the tail-beat frequency of its neighbor. Our results shed light on the fluid dynamical aspects of the lateral-line sensing mechanism used by fish. Furthermore, the presented approach based on FFT is especially suitable for applications in bioinspired swimming robotics. We provide suggestions for the design of artificial systems consisting of multiple stress sensors for robotic fish to improve their performance in collective operation.

Hydrodynamical Fingerprint of a Neighbour in a Fish Lateral Line
G. Li, D. Kolomenskiy, H. Liu, B. Thiria & R. Godoy-Diana Frontiers in Robotics and AI: Bio-Inspired Robotics section 9, 825889 (2022)
doi: 10.3389/frobt.2022.825889

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BIOMIM @ EWTEC 2021

Two papers from the team were presented at the 11th European Wave and Tidal Energy Conference in Plymouth, UK!

Ocean wave transmission, reflection and absorption by rows of vertical structures along the coastline
A. Mérigaud, B. Thiria & R. Godoy-Diana
In Proceedings of the 11th European Wave and Tidal Energy Conference, 5-9th Sept 2021, Plymouth, UK.
preprint: arXiv:2111.14816

On the interaction of surface water waves and fully-submerged elastic plates
G. Polly, A. Mérigaud, R. Alhage, B. Thiria & R. Godoy-Diana
In Proceedings of the 11th European Wave and Tidal Energy Conference, 5-9th Sept 2021, Plymouth, UK.
preprint: arXiv:2111.03018

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Revisiting the transmission and reflection of water waves over an array of obstacles

With a view to numerical modelling and optimisation of wave energy farms, a simple recursive formulation is employed to solve for the reflection and transmission of plane water waves by a number of rows of vertical obstacles, under the wide-spacing approximation. The proposed recursive formulation relies on the ‘concatenation’ of any two sets of obstacles, for which the reflection–transmission problem is already resolved. Furthermore, the obstacles are allowed to move in any combination of pitch and surge. The proposed recursive model is validated by means of physical experiments in a small-scale wave flume, whereby waves are reflected and transmitted by one, two and three rows of vertical, flexible blades, taking into account dissipation within the fluid along the wave propagation direction. For the special case of identical, regularly spaced rows, under the adopted formalism, distinct theoretical behaviours are highlighted, depending on whether or not individual obstacles absorb (or dissipate) energy as they interact with incoming waves. In a ‘non-dissipative’ case, the well known fact that discrete values of the row-to-row distance 𝐿 completely cancel reflection is retrieved, as well as the existence of ‘band-gap’ intervals, i.e. intervals for 𝐿 where reflection is high, with maximum reflection occurring away from the Bragg condition. In contrast, when the obstacles dissipate or absorb energy as they interact with the fluid, reflection is always non-zero, and, as the number of rows tends to infinity, forms marked Bragg peaks, reaching unity when 𝐿 is a multiple of half a wavelength.

A wide-spacing approximation model for the reflection and transmission of water waves over an array of vertical obstacles
A. Mérigaud, B. Thiria & R. Godoy-Diana
Journal of Fluid Mechanics 923, A2 (2021)
doi: 10.1017/jfm.2021.532

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Decay of streaks and rolls in plane Couette–Poiseuille flow

We report the results of an experimental investigation into the decay of turbulence in plane Couette–Poiseuille flow using ‘quench’ experiments where the flow laminarises after a sudden reduction in Reynolds number 𝑅𝑒. Specifically, we study the velocity field in the streamwise–spanwise plane. We show that the spanwise velocity containing rolls decays faster than the streamwise velocity, which displays elongated regions of higher or lower velocity called streaks. At final Reynolds numbers above 425, the decay of streaks displays two stages: first a slow decay when rolls are present and secondly a more rapid decay of streaks alone. The difference in behaviour results from the regeneration of streaks by rolls, called the lift-up effect. We define the turbulent fraction as the portion of the flow containing turbulence and this is estimated by thresholding the spanwise velocity component. It decreases linearly with time in the whole range of final 𝑅𝑒. The corresponding decay slope increases linearly with final 𝑅𝑒. The extrapolated value at which this decay slope vanishes is 𝑅𝑒𝑎𝑧≈656±10, close to 𝑅𝑒𝑔≈670 at which turbulence is self-sustained. The decay of the energy computed from the spanwise velocity component is found to be exponential. The corresponding decay rate increases linearly with 𝑅𝑒, with an extrapolated vanishing value at 𝑅𝑒𝐴𝑧≈688±10. This value is also close to the value at which the turbulence is self-sustained, showing that valuable information on the transition can be obtained over a wide range of 𝑅𝑒.

Decay of streaks and rolls in plane Couette-Poiseuille flow
T. Liu, B. Semin, L. Klotz, R. Godoy-Diana, J. E. Wesfreid & T. Mullin
Journal of Fluid Mechanics 915, A65 (2021)
doi:10.1017/jfm.2021.89

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Experiments & numerical modelling of burst-and-coast fish swimming

Body and caudal fin undulations are a widespread locomotion strategy in fish, and their swimming kinematics is usually described by a characteristic frequency and amplitude of the tail-beat oscillation. In some cases, fish use intermittent gaits, where a single frequency is not enough to fully describe their kinematics. Energy efficiency arguments have been invoked in the literature to explain this so-called burst-and-coast regime but well controlled experimental data are scarce. Here we report on an experiment with burst-and-coast swimmers and a numerical model based on the observations to show that: (1) fish modulate a unique intrinsic cycle to sustain the demanded speed by modifying the bursting to coasting ratio while maintaining the duration of the cycle nearly constant; and (2) the chosen kinematics correspond to energy-saving gaits over the range of swimming speeds tested.

Burst-and-coast swimmers optimize gait by adapting unique intrinsic cycle
G. Li, I. Ashraf, B. François, D. Kolomenskiy, F. Lechenault, R. Godoy-Diana & B. Thiria
Communications Biology 4, 40 (2021)
[doi:10.1038/s42003-020-01521-z]
preprint: arXiv:2002.09176
Behind the paper blog post: https://ecoevocommunity.nature.com/posts/on-the-intermittent-tail-beat-kinematics-in-steady-swimming-fish


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Synchronized Side-by-Side Swimmers

On the fluid dynamical effects of synchronization in side-by-side swimmers
R. Godoy-Diana, J. Vacher, V. Raspa & B. Thiria
Biomimetics 4(4), 77 (2019)
https://doi.org/10.3390/biomimetics4040077
(in the Special issue “Fluid Dynamic Interactions in Biological and Bioinspired Propulsion”, Editors K. W. Moored and G. V. Lauder)

https://vimeo.com/378101069

We examined experimentally the in-phase and anti-phase synchronized swimming of two self-propelled independent flexible foils swimming side-by-side in a water tank. The foils are actuated by pitching oscillations at one extremity—the head of the swimmers—and the flow engendered by their undulations is analyzed using two-dimensional particle image velocimetry in their frontal symmetry plane. Following recent observations on the behavior of real fish, we focus on the comparison between in-phase and anti-phase actuation by fixing all other geometric and kinematic parameters. We show that swimming with a neighbor is beneficial for both synchronizations tested, as compared to swimming alone, with an advantage for the anti-phase synchronization. We show that the advantage of anti-phase synchronization in terms of swimming performance for the two-foil “school” results from the emergence of a periodic coherent jet between the two swimmers.

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On the energetics and stability of a minimal fish school

On the energetics and stability of a minimal fish school
G. Li, D. Kolomenskiy, H. Liu, B. Thiria & R. Godoy-Diana
PLoS ONE 14(8): e0215265 (2019)
https://doi.org/10.1371/journal.pone.0215265

See also:
On the interference of vorticity and pressure fields of a minimal fish school
G. Li, D. Kolomenskiy, H. Liu, B. Thiria & R. Godoy-Diana
Journal of Aero Aqua Bio-mechanisms 8 (1), 27-33 (2019)
[doi:10.5226/jabmech.8.27]

The physical basis for fish schooling is examined using three-dimensional numerical simulations of a pair of swimming fish, with kinematics and geometry obtained from experimental data. Energy expenditure and efficiency are evaluated using a cost of transport function, while the effect of schooling on the stability of each swimmer is examined by probing the lateral force and the lateral and longitudinal force fluctuations. We construct full maps of the aforementioned quantities as functions of the spatial pattern of the swimming fish pair and show that both energy expenditure and stability can be invoked as possible reasons for the swimming patterns and tail-beat synchronization observed in real fish. Our results suggest that high cost of transport zones should be avoided by the fish. Wake capture may be energetically unfavorable in the absence of kinematic adjustment. We hereby hypothesize that fish may restrain from wake capturing and, instead, adopt side-to-side configuration as a conservative strategy, when the conditions of wake energy harvesting are not satisfied. To maintain a stable school configuration, compromise between propulsive efficiency and stability, as well as between school members, ought to be considered.

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Interference model for an array of wave-energy-absorbing flexible structures


C. Nové-Josserand, R. Godoy-Diana, & B. Thiria
Physical Review Applied 11, 034054 (2019)
[doi:10.1103/PhysRevApplied.11.034054]

Considerable work has been undertaken for the improvement of wave-energy converters and array design. It has recently been suggested that by extracting wave energy, these farms could also serve to protect shorelines from wave damage. The present work focuses on the local effects of wave-structure interactions within an array of oscillating absorbers to optimize global effects, such as reflection, damping, and energy absorption. We use a model system of flexible blades, subjected to monochromatic waves, and develop a simplified one-dimensional model to predict optimal configurations, depending on various parameters, which include the number of blades, their spacing, and their flexibility. Optimal configurations are found to be close to regular patterns, and the impact of array configurations is shown to be limited regarding wave dissipation, mainly due to a competition between reflection and absorption.

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Hydrodynamics of the frontal strike in aquatic snakes

Hydrodynamics of the frontal strike in aquatic snakes: drag, added mass and the consequences for prey capture success

 

M. Segall, A. Herrel & R. Godoy-Diana
Bioinspiration & Biomimetics 14, 036005 (2019)
[doi:10.1088/1748-3190/ab0316]
bioRxiv preprint: https://doi.org/10.1101/411850

Transient locomotion under water is highly constrained by drag and added mass, yet some aquatic snakes catch their prey using a fast forward acceleration, with the mouth opened. These aquatic snakes show a convergence of their head shape in comparison with closely related species that do not forage under water. As both drag and added mass are related to some extent to the shape of the moving object, we explored how shape impacts the hydrodynamic forces applied to the head of a snake during a prey capture event. We compared two 3D- Continue reading “Hydrodynamics of the frontal strike in aquatic snakes”

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Review paper: Insect and insect-inspired aerodynamics

Image credit: T. Engels (see also Engels et al. Physical Review Fluids 4, 013103, 2019)

 
 
 
 
 
 

Insect and insect-inspired aerodynamics: unsteadiness, structural mechanics and flight control
R. Bomphrey & R. Godoy-Diana
Current Opinion in Insect Science 30, 26–32 (2018)
[doi:10.1016/j.cois.2018.08.003]

Flying insects impress by their versatility and have been a recurrent source of inspiration for engineering devices. A large body of literature has focused on various aspects of insect flight, with an essential part dedicated to the dynamics of flapping wings and their intrinsically unsteady aerodynamic mechanisms. Insect wings flex during flight and a better understanding of structural mechanics and aeroelasticity is emerging. Most recently, insights from solid and fluid mechanics have been integrated with physiological measurements from visual and mechanosensors in the context of flight control in steady airs and through turbulent conditions. We review the key recent advances concerning flight in unsteady environments and how the multi-body mechanics of the insect structure — wings and body — are at the core of the flight control question. The issues herein should be considered when applying bio-informed design principles to robotic flapping wings.

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PhD defense: Salomé Gutiérrez-Ramos. Acoustic confinement of Escherichia coli: The impact on biofilm formation

PhD defense on October 18th, 2018, 2:30pm, at the PMMH meeting room (Sorbonne Université, Barre Cassan, Bât. A 1er Étage, 7 Quai Saint Bernard, 75005 Paris).

Acoustic confinement of Escherichia coli: The impact on biofilm formation

Brownian or self-propelled particles in aqueous suspensions can be trapped by acoustic fields generated by piezoelectric transducers usually at frequencies in the Megahertz. The obtained confinement allows the study of rich collective behaviours like clustering or spreading dynamics in microgravity-like conditions. The acoustic field induces the levitation of self-propelled particles and provides secondary lateral forces to capture them at nodal planes. Here, we give a step forward in the field Continue reading “PhD defense: Salomé Gutiérrez-Ramos. Acoustic confinement of Escherichia coli: The impact on biofilm formation”

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Clotilde Nové-Josserand’s PhD defense. Converting wave energy from fluid–elasticity interactions

PhD defense on October 1st, 2018, 2:30pm, at the PMMH meeting room (Sorbonne Université, Barre Cassan, Bât. A 1er Étage, 7 Quai Saint Bernard, 75005 Paris).

Converting wave energy from fluid–elasticity interactions

Understanding the mechanisms involved in wave-structure interactions is of high interest for the development of efficient wave energy harvesters as well as for coastal management. In this thesis, we study the interactions of surface waves with a model array of slender flexible structures, in view of developing an efficient system for both attenuating and harvesting wave energy. The presented results are based around experimental investigations, by means of small scale facilities, in which the spatial arrangement of the flexible objects is the key parameter of Continue reading “Clotilde Nové-Josserand’s PhD defense. Converting wave energy from fluid–elasticity interactions”

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Forced wakes far from threshold

Forced wakes far from threshold: Stuart–Landau equation applied to experimental data
S. Boury, B. Thiria, R. Godoy-Diana, G. Artana, J. E. Wesfreid, and J. D’Adamo
Physical Review Fluids 3, 091901(R) (2018)
[doi:10.1103/PhysRevFluids.3.091901]

We studied with the Stuart-Landau (SL) amplitude equation, a wake flow control scenario using experimental data from a cylinder wake forced by plasma actuators. Given the formal framework recently discussed by Gallaire et al. [Fluid Dyn. Res. 48, 061401 (2016)] on pushing amplitude equations far from threshold, we analyze experimental data of a forced wake in order to test the SL reduced order model. Linear stability theory and global mode concepts are used to determine the SL parameters. The extension to forced wakes of the SL model had been proposed by Thira and Wesfreid [J. Fluid Mech. 579, 137 (2007)] in the context of their study on stability properties, but its employment still remained an open question. Here, we show that a forced wake at a Reynolds number far from the first threshold can also attain the critical behavior described by the SL model.

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Intesaaf Ashraf’s PhD defense. Interactions in Collective Fish Swimming

PhD defense on April 4th, 2018, 3pm, at the new PMMH meeting room (Sorbonne Université, Barre Cassan, Bât. A 1er Étage, 7 Quai Saint Bernard, 75005 Paris).

Interactions in Collective Fish Swimming

The question of how individuals in a population organise when living in groups arises for systems as different as a swarm of microorganisms or a flock of seagulls; and the different patterns for moving collectively involve a complex interaction of a wide spectrum of reasons, such as evading predators, optimising food prospection or diminishing energy consumption. The basic ingredient in such problems is the communication mechanism between individuals, that is to say, the way in which two neighbours sense each other, constituting the fabric of social behaviour. In this work we studied the case of fish schooling using a popular aquarium fish, the red nose tetra fish Hemigrammus bleheri. These fish are known to swim in highly cohesive groups and to sense each other both visually and through the lateral line, a system of organs based on the ability of hair cells to detect movement in their environment. In our experiments Continue reading “Intesaaf Ashraf’s PhD defense. Interactions in Collective Fish Swimming”

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Surface wave energy absorption by a partially submerged bio-inspired canopy

Surface wave energy absorption by a partially submerged bio-inspired canopy
C. Nové-Josserand, F. Castro Hebrero, L.-M. Petit, W. Megill, R. Godoy-Diana & B. Thiria
Bioinspiration & Biomimetics 13 036006 (2018)
[doi:10.1088/1748-3190/aaae8c]
PDF file

Aquatic plants are known to protect coastlines and riverbeds from erosion by damping waves and fluid flow. These flexible structures absorb the fluid-borne energy of an incoming fluid by deforming mechanically. In this paper we focus on the mechanisms involved in these fluid-elasticity interactions, as an efficient energy harvesting system, using an experimental canopy model in a wave tank.We study an array of partially-submerged flexible structures that are subjected to the action of a surface wave field, investigating in particular the role of spacing between the elements of the array on the ability of our system to absorb energy from the flow. The energy absorption potential of the canopy model is examined using global wave height measurements for the wave field and local measurements of the elastic energy based on the kinematics of each element of the canopy. We study different canopy arrays and show in particular that flexibility improves wave damping by around 40%, for which half is potentially harvestable.

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Review paper: Fluid dynamic drag in animal swimming and flying

On the diverse roles of fluid dynamic drag in animal swimming and flying
R. Godoy-Diana & B. Thiria
Journal of the Royal Society Interface 15 20170715 (2018)
[doi:10.1098/rsif.2017.0715]

Questions of energy dissipation or friction appear immediately when addressing the problem of a body moving in a fluid. For the most simple problems, involving a constant steady propulsive force on the body, a straightforward relation can be established balancing this driving force with a skin friction or form drag, depending on the Reynolds number and body geometry. This elementary relation closes the full dynamical problem and sets, for instance, average cruising velocity or energy cost. Continue reading “Review paper: Fluid dynamic drag in animal swimming and flying”

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UPtoPARIS

ESPCI proposes a brand new international doctoral programme – UPtoPARIS: More info here: https://www.upto.paris/-upTo-paris-.html

The first call closes on February 28th, 2018. Our project on bio-inspired wave-energy conversion is one of the projects selected (project page here).

Bio-inspired elastic structures for ocean wave energy conversion

The purpose of this project is to study a surface wave absorbing system with potential for both coastal erosion control and renewable energy production. The system is inspired by the fluid flow calming effects of aquatic vegetation in near-shore and riverine environments. The system consists of an ensemble of flexible slender structures mimicking an underwater canopy whose collective dynamics is forced by the action of the waves. The reconfiguration of slender structures by their interaction with an external flow has been a vibrant subject of research in the past decade, and applications abound in this archetype of interdisciplinary subject where biology, physics and engineering meet. Continue reading “UPtoPARIS”

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Marion Segall’s PhD defense. Water as a driver of evolution: the example of aquatic snakes

PhD defense on November 10th, at 2pm, in the auditorium of the Grande Galerie de l’Evolution.

Water as a driver of evolution: the example of aquatic snakes

Marion Segall

1. UMR 7179, CNRS-MNHN, Mécanismes adaptatifs et Evolution, équipe FUNEVOL, Département d’Ecologie et de Gestion de la Biodiversité. Pavillon d’anatomie comparée, 55 rue Buffon, case postale 55, 75231 Paris cedex 5, France.
2. UMR 7636, CNRS, ESPCI Paris–PSL Research University, Sorbonne Université, U Paris Diderot, Physique et Mécanique des Milieux Hétérogènes. 10 rue Vauquelin, 75005 Paris, France

Abstract

Animal-environment interactions are determinant in driving the evolution of phenotypic variation. Most aquatic animals have developed adaptations to overcome the physical constraints inherent to an aquatic lifestyle and particularly to motion in water. These constraints are the drag and the added mass if an acceleration is involved in the motion, such as during prey capture. The aim of this project is to evaluate the role of water as a potential driver of evolution of aquatic snakes by focusing on morphological and behavioral convergences during underwater prey capture. Snakes are a good model as an aquatic life- Continue reading “Marion Segall’s PhD defense. Water as a driver of evolution: the example of aquatic snakes”

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Flapping elastic plates as a model of fish-like swimmers

Modelling of an actuated elastic swimmer
M. Piñeirua, B. Thiria & R. Godoy-Diana
Journal of Fluid Mechanics 829 731-750 (2017)
[doi:10.1017/jfm.2017.570]PDF file

We studied the force production dynamics of undulating elastic plates as a model for fish-like inertial swimmers. Using a beam model coupled with Lighthill’s large-amplitude elongated-body theory, we explore different localised actuations at one extremity of the plate (heaving, pitching and a combination of both) in order to quantify the reactive and resistive contributions to the thrust. The latter has the Continue reading “Flapping elastic plates as a model of fish-like swimmers”

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Synchronisation and pattern formation in fish swimming

Tetrafish2

Simple phalanx pattern leads to energy saving in cohesive fish schooling
I. Ashraf, H. Bradshaw, T. T. Ha, J. Halloy, R. Godoy-Diana, B. Thiria
PNAS 114 (36) 9599-9604 (2017)
[doi:10.1073/pnas.1706503114]PDF file

Synchronisation and collective swimming patterns in Hemigrammus bleheri
I. Ashraf, R. Godoy-Diana, J. Halloy, B. Collignon, B. Thiria
Journal of the Royal Society Interface 13 20160734 (2016)
[doi:10.1098/rsif.2016.0734] PDF file

The question of how individuals in a population organize when living in groups arises for systems as different as a swarm of microorganisms or a flock of seagulls. The different patterns for moving collectively involve a wide spectrum of reasons, such as evading predators or optimizing food prospection. Also, the schooling pattern has often been associated with an advantage in terms of energy consumption. We use a popular aquarium fish, the red nose tetra fish, Hemigrammus bleheri, which is known to swim in highly cohesive groups, to ana- lyze the schooling dynamics. In our experiments, fish swim in a shallow-water tunnel with controlled velocity, Continue reading “Synchronisation and pattern formation in fish swimming”

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Hydrodynamic constraints and evolution of aquatic snakes

snakesDoes aquatic foraging impact head shape evolution in snakes ?
M. Segall, R. Cornette, A-C. Fabre, R. Godoy-Diana & A. Herrel
Proceedings of the Royal Society B 283 20161645 (2016).
[doi:10.1098/rspb.2016.1645] PDF file

Evolutionary trajectories are often biased by developmental and historical factors. However, environmental factors can also impose constraints on the evolutionary trajectories of organisms leading to convergence of morphology in similar ecological contexts. The physical properties of water impose strong constraints on aquatic feeding animals by generating pressure waves that can alert prey and potentially push them away from the mouth. These hydrodynamic constraints have resulted in the independent evolution of suction feeding in most groups of secondarily aquatic tetrapods. Despite the fact that snakes cannot use suction, they have invaded the aquatic milieu many times independently. Here, we test whether the aquatic environment has constrained head Continue reading “Hydrodynamic constraints and evolution of aquatic snakes”

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Resistive thrust production can be as crucial as added mass mechanisms for inertial undulatory swimmers

resistive_vs_reactiveResistive thrust production can be as crucial as added mass mechanisms for inertial undulatory swimmers
M. Piñeirua, R. Godoy-Diana & B. Thiria
Physical Review E 92 021001(R) (2015).
[doi:10.1103/PhysRevE.92.021001] arXiv

We address here a crucial point regarding the description of moderate to high Reynolds numbers aquatic swimmers. For decades, swimming animals have been classified in two different families of propulsive mechanisms based on the Reynolds number: the resistive swimmers, using local friction to produce the necessary thrust force for locomotion at low Reynolds number, and the reactive swimmers, lying in the high Reynolds range, and using added mass acceleration (described by perfect fluid theory). Continue reading “Resistive thrust production can be as crucial as added mass mechanisms for inertial undulatory swimmers”

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Centrifugal instability of Stokes layers in crossflow

centrifugal_instability_cylinderCentrifugal instability of Stokes layers in crossflow: the case of a forced cylinder wake
J. D’Adamo, R. Godoy-Diana & J. E. Wesfreid
Proceedings of the Royal Society A 471: 20150011 (2015).
DOI:10.1098/rspa.2015.0011

A circular cylinder oscillating in a viscous fluid produces an axisymmetric Stokes layer, a fundamental flow susceptible to centrifugal instabilities [see e.g. Seminara & Hall, Proc. Roy. Soc. London A 350, 299 (1976)]. In the present work we study such problem in the wake flow around a circular cylinder at Re = 100 performing rotary oscillations. Continue reading “Centrifugal instability of Stokes layers in crossflow”

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Four-winged flapping flyer in forward flight

mite4ailes Four-winged flapping flyer in forward flight
R. Godoy-Diana, P. Jain, M. Centeno, A. Weinreb & B. Thiria
In Klapp et al. (eds.), Selected Topics of Computational and Experimental Fluid Mechanics, Environmental Science and Engineering, pp. 147-158. Springer (2015).
[doi:10.1007/978-3-319-11487-3_8] PDF file

We study experimentally a four-winged flapping flyer with chord-wise flexible wings in a self-propelled setup. For a given physical configuration of the flyer (i.e. fixed distance between the forewing and hindwing pairs and fixed wing flexibility), we explore the kinematic parameter space constituted by the flapping frequency and the forewing-hindwing phase lag. Continue reading “Four-winged flapping flyer in forward flight”

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Undulatory swimming near a wall

wall_effect_visuLarge-amplitude undulatory swimming near a wall
R. Fernández-Prast, V. Raspa, B. Thiria, F. Huera-Huarte & R. Godoy-Diana. Bioinspiration and Biomimetics 10 016003 (2015).

doi:10.1088/1748-3190/10/1/016003

[PDF file]

We study experimentally the propulsive dynamics of flexible undulating foils in a self-propelled swimming configuration near a wall. Measurements of swimming speed and propulsive force are performed, together with full recordings of the elastic wave kinematics and particle image velocimetry. Continue reading “Undulatory swimming near a wall”

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Habilitation à diriger des recherches (HDR)

Bio-inspired swimming and flying – Vortex dynamics and fluid/structure interaction

Ramiro Godoy-Diana
Habilitation à diriger des recherches, Université Pierre et Marie Curie, 2014.
[hal.archives-ouvertes.fr]

PDF file here (19.4 MB)

The present document, prepared in view of obtaining the Habilitation à diriger des recherches, reviews my main research subject at PMMH since 2006, which concerns the study of swimming and flying inspired by nature. Canonical examples of flapping flight and undulatory swimming are explored using simplified experimental models as a starting point. This allows for the discussion of some fundamental questions related to the physics of bio-inspired locomotion at “intermediate” Reynolds numbers. In particular, we address the strong fluid-structure interactions that arise in these problems, where we have focused on: simplified models of flapping foils in hydrodynamic tunnel experiments, especially in the dynamics of vorticity in the wake of an oscillating foil ; mechanical models of flapping flyers with flexible wings in a self-propelled configuration (in the spirit of the pioneer experiments of Etienne-Jules Marey), as well as novel experimental models of undulatory swimming.
Continue reading “Habilitation à diriger des recherches (HDR)”

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Drag in undulatory swimmers

vortices_foilsVortex-induced drag and the role of aspect ratio in undulatory swimmers
V. Raspa, S. Ramananarivo, B. Thiria & R. Godoy-Diana. Physics of Fluids, 26 : 041701 (2014).

During cruising, the thrust produced by a self-propelled swimmer is balanced by a global drag force. For a given object shape, this drag can involve skin friction or form drag, both being well-documented mechanisms. However, for swimmers whose shape is changing in time, the question of drag is not yet clearly established. Continue reading “Drag in undulatory swimmers”

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Propagating waves in bounded elastic media

fig_beamsPropagating waves in bounded elastic media: an application to the efficiency of bio-inspired swimmers
S. Ramananarivo, R. Godoy-Diana & B. Thiria.
EPL, 105 : 54003 (2014).

Confined geometries usually involve reflected waves interacting together to form a spatially stationary pattern. Our recent study on the locomotion of a self-propelled elastic swimmer on a free surface [Ramananarivo et al. 2013], however, has shown that propagating wave kinematics can naturally emerge in a forced elastic rod, even with boundary conditions involving significant reflections. This particular behavior is observed only in the presence of strong damping. Continue reading “Propagating waves in bounded elastic media”

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Sophie Ramananarivo’s PhD: Propulsion biomimétique de structures élastiques

PhD defense on January 10, 2014 at ESPCI

Propulsion biomimétique de structures élastiques

Sophie Ramananarivo

https://pastel.archives-ouvertes.fr/pastel-00955323

Abstract

Birds and aquatic animals exploit the surrounding fluid to propel themselves in air or water. In inertial regimes, the mechanisms of propulsion are based on momentum transfer; by flapping wings or fins, animals accelerate fluid in their wake, creating a jet that propels them forward. The structures used to move can be flexible, and are thus likely to experiment large bending. Literature showed that those passive deformations can improve propulsive performance, when exploited in a constructive way. The mechanisms at play however remain poorly understood. In the present thesis, we aim at studying how a flapping elastic structure generates thrust, using two experimental biomimetic models. The first setup is a simplified mechanical insect with flexible wings, and the second one is a swimmer whose elastic body mimics the undulating motion of an eel. We show that propulsive performance is significantly influenced by the way the systems passively bend, and that their elastic response can be described by simplified theoretical models of forced oscillators. Those models also bring forward the crucial role of the quadratic fluid damping that resists the flapping motion. This result introduces the counter-intuitive idea that it is sometimes desirable to dissipate part of the energy in the fluid, in order to improve performance.

Jury
Christophe Clanet (Rapporteur)
Christophe Eloy (Rapporteur)
Yves Couder (Président)
Emmanuel de Langre (Examinateur)
Jean-Marc Di Meglio (Examinateur)
Ramiro Godoy-Diana (Directeur de Thèse)
Benjamin Thiria (Directeur de Thèse)

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Passive elastic mechanism to mimic fish-muscles action in anguilliform swimming

nageur_Ramananarivo_etalPassive elastic mechanism to mimic fish-muscles action in anguilliform swimming
S. Ramananarivo; R. Godoy-Diana & B. Thiria.
Journal of the Royal Society Interface 10 : 20130667 (2013).

Abstract: Swimmers in nature use body undulations to generate propulsive and maneuvering forces. The an- guilliform kinematics is driven by muscular actions all along the body, involving a complex temporal and spatial coordination of all the local actuations. Such swimming kinematics can be reproduced artificially, in a simpler way, by using passively the elasticity of the body. Here we present experiments on self-propelled elastic swimmers at a free surface in the inertial regime. Continue reading “Passive elastic mechanism to mimic fish-muscles action in anguilliform swimming”

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Topology-induced effect in biomimetic propulsive wakes

two_flapsTopology-induced effect in biomimetic propulsive wakes
V. Raspa; R. Godoy-Diana & B. Thiria.
Journal of Fluid Mechanics, 729: 377-387 (2013).

Abstract: It is known that the wake pattern observed in a cross-section behind swimming or flying animals is typically characterized by the presence of periodical vortex shedding. However, depending on species, propulsive wakes can differ according to the spatial ordering of the main vortex structures. We conducted a very precise experiment to analyse the role of the topology of the wake in the generation of propulsion by comparing two prototypical cases in a quasi-two-dimensional view. Continue reading “Topology-induced effect in biomimetic propulsive wakes”

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Force balance in the take-off of a pierid butterfly


montage_Pieris_rapaeForce balance in the take-off of a pierid butterfly: relative importance and timing of leg impulsion and aerodynamic forces

G. Bimbard, D. Kolomenskiy, O. Bouteleux, J. Casas & R. Godoy-Diana.
Journal of Experimental Biology, 216 : 3551-3563 (2013).

Abstract: Up to now, the take-off stage remains an elusive phase of insect flight relatively poorly explored compared to other maneuvers. An overall assessment of the different mechanisms involved in the force production during take-off has never been explored. Focusing on the first downstroke, we have addressed this problem from a force balance perspective in butterflies taking-off from the ground. Continue reading “Force balance in the take-off of a pierid butterfly”